Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs79658135 chr11:129973425 G/T 1.97E-6 493 30.93 32.22 22.8 KM Plot
PRAD rs79664396 chr4:185178469 G/C 2.95E-11 487 31.37 28.62 20.93 KM Plot
PRAD rs7969222 chr12:9470120 G/A 3.84E-12 482 4.87 24.93 31.27 KM Plot
PRAD rs7969506 chr12:3132647 C/G 0.000163 487 27.32 31.13 30.85 KM Plot
PRAD rs79742506 chr7:6781075 G/A 5.83E-11 486 31.23 27.03 33.75 KM Plot
PRAD rs79761807 chr6:43341088 C/A 5.57E-10 484 31.25 28.57 44.3 KM Plot
PRAD rs79826261 chr9:72957356 C/T 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs79831688 chr9:72842130 C/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs79844784 chr6:52952815 A/G 8.05E-12 484 31.25 31 19.43 KM Plot
PRAD rs79849356 chr15:83402305 T/C 1.08E-5 489 30.93 31.02 31.27 KM Plot
PRAD rs79875071 chr15:47810386 A/T 0 484 31.38 29.4 25.67 KM Plot
PRAD rs79875872 chr1:1157631 G/A 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs79888626 chr17:37815563 G/C 5.4E-6 493 30.8 33.05 28.63 KM Plot
PRAD rs79978922 chr20:435461 G/A 7.21E-8 493 31.27 23.07 21.2 KM Plot
PRAD rs79998175 chr5:154184505 T/C 0 487 29.32 36.05 4.87 KM Plot